There are also the kind of boxes that is used to house miniature armies for strategy battles, like for instance https://www.feldherr.net/ or http://www.krmulticase.com/default.aspx.
Those come with foam inlays and there are a lot of options for the type of inlays (though they are mostly designed with miniatures in mind).
Since there is a lot of foam it would be easy to pin items with needles, put cardboard holders into them or use extra foam to keep things from moving around.
/Andreas
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